Prepare dataLimits and conditions
Data preparation:limits and conditions.
Which preparation steps are supported, which are deliberately excluded, and what the checks cannot establish.
Steps it does not perform
- No imputation or automatic exclusion
- Missing values are not filled in, and outliers are not removed automatically.
- No normalization or batch correction
- General normalization and batch correction are not performed. Bulk RNA-seq uses its own fixed processing profile; see Supported analyses.
- No automatic aggregation or guessed joins
- Technical replicates are not averaged automatically, and ambiguous IDs are never matched by guesswork.
Supported inputs
- Formats
- CSV and JSON. Joining combines one measurement table with one sample-information table through a one-to-one ID key.
- Numbers
- Values must be plain finite decimals: no exponent notation, at most 40 characters, and either zero or between 10⁻¹² and 10⁶ in magnitude.
- Unit conversion
- One adopted same-dimension conversion with a fixed factor. Conversions that change dimension are refused.
- Equipment-failure records
- One type of outcome-independent equipment failure in a two-independent-group study analyzed with Student’s t-test. That the failure was unrelated to the outcome is your declaration, not something SciGround proves; if it is unknown, only limited results are saved. General missing data, deaths, detection limits, and outcome-dependent quality control are out of scope.
- Accepted data
- Data you have the right to use, that are not identifiable or re-identifiable, and that are not clinical. See Data and security.
What the checks cannot establish
- Who sent a file
- SciGround confirms the bytes it received, not who sent them. Keeping uploads to researchers depends on how you assign roles.
- Measurement truth
- A clean quality report does not prove that the instrument measured correctly or that samples were labeled correctly at the bench.
- Recovered values
- Analysis with missing values describes the observed data under stated conditions. It does not recover what the missing measurements would have been.
- History
- Tidying data does not make an analysis pre-specified or a later correction eligible.